Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033174_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2820264 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5866 | 0.20799471255173274 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4693 | 0.1664028615760794 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4050 | 0.0 | 52.283806 | 1 |
GTATCAA | 7410 | 0.0 | 42.80075 | 1 |
TCAACGC | 8835 | 0.0 | 35.705296 | 4 |
ATCAACG | 8880 | 0.0 | 35.577297 | 3 |
CAACGCA | 9055 | 0.0 | 34.83904 | 5 |
AACGCAG | 9490 | 0.0 | 33.329945 | 6 |
TATCAAC | 9525 | 0.0 | 33.3162 | 2 |
ACGCAGA | 10850 | 0.0 | 29.065546 | 7 |
CGCAGAG | 11250 | 0.0 | 27.947067 | 8 |
GTACATG | 8840 | 0.0 | 25.656916 | 1 |
TACATGG | 8865 | 0.0 | 24.925035 | 2 |
GCAGAGT | 12525 | 0.0 | 24.651018 | 9 |
GCGTACG | 100 | 0.0017472877 | 23.527712 | 1 |
GTGGTAT | 1995 | 0.0 | 23.350813 | 1 |
ACATGGG | 9095 | 0.0 | 23.312588 | 3 |
TGGTATC | 1900 | 0.0 | 22.021812 | 2 |
GAGTACT | 7770 | 0.0 | 21.198195 | 12-13 |
CATGGGG | 6260 | 0.0 | 20.727715 | 4 |
AGAGTAC | 11480 | 0.0 | 20.304253 | 10-11 |
CAGAGTA | 12330 | 0.0 | 20.086061 | 10-11 |