Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033170_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3249945 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4842 | 0.1489871367053904 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4089 | 0.12581751383484951 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4270 | 0.0 | 49.37177 | 1 |
GTATCAA | 7725 | 0.0 | 41.970997 | 1 |
TCAACGC | 8860 | 0.0 | 35.976307 | 4 |
ATCAACG | 8870 | 0.0 | 35.935745 | 3 |
CAACGCA | 9160 | 0.0 | 34.79804 | 5 |
AACGCAG | 9575 | 0.0 | 33.326614 | 6 |
TATCAAC | 9785 | 0.0 | 32.91221 | 2 |
ACGCAGA | 11130 | 0.0 | 28.459345 | 7 |
CGCAGAG | 11370 | 0.0 | 27.7751 | 8 |
GCAGAGT | 12765 | 0.0 | 24.481665 | 9 |
GTACATG | 8755 | 0.0 | 24.455908 | 1 |
TACATGG | 8825 | 0.0 | 23.70678 | 2 |
ACATGGG | 9100 | 0.0 | 21.853428 | 3 |
GAGTACT | 8485 | 0.0 | 21.51655 | 12-13 |
CAGAGTA | 12515 | 0.0 | 20.12646 | 10-11 |
AGAGTAC | 11775 | 0.0 | 19.87476 | 10-11 |
GTGGTAT | 2520 | 0.0 | 19.420542 | 1 |
TGGTATC | 2370 | 0.0 | 19.24202 | 2 |
GTACTTT | 9520 | 0.0 | 19.078579 | 14-15 |
GAGTACA | 6900 | 0.0 | 18.891184 | 1 |