Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033166_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4970458 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6621 | 0.13320704047795998 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5602 | 0.11270591160814558 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 6295 | 0.0 | 49.038242 | 1 |
GTATCAA | 11665 | 0.0 | 41.107048 | 1 |
TCAACGC | 13240 | 0.0 | 35.51242 | 4 |
ATCAACG | 13415 | 0.0 | 35.084206 | 3 |
CAACGCA | 13680 | 0.0 | 34.33584 | 5 |
AACGCAG | 14300 | 0.0 | 32.962746 | 6 |
TATCAAC | 15060 | 0.0 | 31.53327 | 2 |
ACGCAGA | 16525 | 0.0 | 28.154785 | 7 |
CGCAGAG | 16590 | 0.0 | 27.873665 | 8 |
GTACATG | 12910 | 0.0 | 25.405828 | 1 |
GCAGAGT | 18645 | 0.0 | 24.549212 | 9 |
TACATGG | 13085 | 0.0 | 23.680141 | 2 |
ACATGGG | 13135 | 0.0 | 22.694855 | 3 |
GAGTACT | 12220 | 0.0 | 20.728056 | 12-13 |
AGAGTAC | 17085 | 0.0 | 20.698196 | 10-11 |
CAGAGTA | 18575 | 0.0 | 19.746271 | 10-11 |
CATGGGG | 8320 | 0.0 | 19.101242 | 4 |
AGTACTT | 13250 | 0.0 | 18.637938 | 12-13 |
GTATAGA | 2110 | 0.0 | 18.510683 | 1 |
GTACTTT | 13885 | 0.0 | 18.242481 | 14-15 |