Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033161_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3804217 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4665 | 0.12262707411275435 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3950 | 0.0 | 47.770508 | 1 |
GTATCAA | 7085 | 0.0 | 40.51376 | 1 |
TCAACGC | 8075 | 0.0 | 34.643013 | 4 |
ATCAACG | 8190 | 0.0 | 34.15657 | 3 |
CAACGCA | 8370 | 0.0 | 33.42158 | 5 |
AACGCAG | 8820 | 0.0 | 31.75676 | 6 |
TATCAAC | 9195 | 0.0 | 30.525572 | 2 |
GTACATG | 10025 | 0.0 | 29.80588 | 1 |
TACATGG | 10020 | 0.0 | 28.153002 | 2 |
ACATGGG | 10075 | 0.0 | 26.972675 | 3 |
ACGCAGA | 10390 | 0.0 | 26.77717 | 7 |
CGCAGAG | 10645 | 0.0 | 26.001913 | 8 |
GAGTACA | 6800 | 0.0 | 22.489874 | 1 |
GCAGAGT | 12375 | 0.0 | 22.177027 | 9 |
TATACCG | 245 | 8.47831E-9 | 21.108728 | 5 |
GGACCGT | 505 | 0.0 | 20.473392 | 6 |
CATGGGG | 7065 | 0.0 | 20.363409 | 4 |
AGAGTAC | 10845 | 0.0 | 19.78094 | 10-11 |
AGTACAT | 7130 | 0.0 | 19.386482 | 2 |
GAGTACT | 7950 | 0.0 | 18.826864 | 12-13 |