Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033159_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1762144 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3050 | 0.17308460602538725 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2473 | 0.14034040350845334 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2370 | 0.0 | 52.603394 | 1 |
GTATCAA | 4270 | 0.0 | 41.095776 | 1 |
TCAACGC | 5035 | 0.0 | 34.08013 | 4 |
ATCAACG | 5040 | 0.0 | 33.953045 | 3 |
CAACGCA | 5155 | 0.0 | 33.471096 | 5 |
AACGCAG | 5385 | 0.0 | 32.116043 | 6 |
TATCAAC | 5400 | 0.0 | 31.950687 | 2 |
ACGCAGA | 6165 | 0.0 | 27.823223 | 7 |
CGCAGAG | 6230 | 0.0 | 27.607582 | 8 |
GTACATG | 4595 | 0.0 | 24.776846 | 1 |
GTGGTAT | 1195 | 0.0 | 24.40844 | 1 |
TACATGG | 4545 | 0.0 | 24.204151 | 2 |
GCAGAGT | 7155 | 0.0 | 23.644392 | 9 |
ACATGGG | 4560 | 0.0 | 22.990473 | 3 |
GAGTACT | 4980 | 0.0 | 21.230679 | 12-13 |
GTGCGCG | 185 | 7.192608E-6 | 20.321398 | 9 |
AGAGTAC | 6645 | 0.0 | 19.90759 | 10-11 |
CAGAGTA | 7205 | 0.0 | 19.632149 | 10-11 |
CTAGACG | 120 | 0.0050577684 | 19.588295 | 4 |
CGGGTCG | 60 | 0.005069558 | 19.581068 | 58-59 |