Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033155_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3837729 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4487 | 0.116918104431032 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3909 | 0.1018571139337874 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 10105 | 0.0 | 34.777386 | 1 |
GGTATCA | 6440 | 0.0 | 34.480125 | 1 |
TCAACGC | 11280 | 0.0 | 30.046078 | 4 |
ATCAACG | 11430 | 0.0 | 29.65177 | 3 |
CAACGCA | 11540 | 0.0 | 29.40986 | 5 |
AACGCAG | 11960 | 0.0 | 28.528341 | 6 |
GTACATG | 10820 | 0.0 | 28.392168 | 1 |
TATCAAC | 12340 | 0.0 | 27.846428 | 2 |
TACATGG | 11165 | 0.0 | 26.398308 | 2 |
ACATGGG | 10715 | 0.0 | 26.234367 | 3 |
ACGCAGA | 13860 | 0.0 | 24.345945 | 7 |
CGCAGAG | 13910 | 0.0 | 24.155815 | 8 |
GCAGAGT | 15335 | 0.0 | 21.665983 | 9 |
AGAGTAC | 12450 | 0.0 | 20.496197 | 10-11 |
CGCGCGT | 190 | 9.056064E-6 | 19.787996 | 7 |
GAGTACT | 8575 | 0.0 | 19.537462 | 12-13 |
CATGGGG | 6755 | 0.0 | 18.788843 | 4 |
GAGTACA | 7865 | 0.0 | 18.423182 | 1 |
CATGGGA | 4490 | 0.0 | 18.216482 | 4 |
AGTACTT | 9365 | 0.0 | 18.03989 | 12-13 |