Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033152_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2373545 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4419 | 0.18617721593650005 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3528 | 0.14863842901651328 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3600 | 0.0 | 46.784164 | 1 |
GTATCAA | 6530 | 0.0 | 40.129192 | 1 |
TCAACGC | 7360 | 0.0 | 35.192028 | 4 |
ATCAACG | 7410 | 0.0 | 35.081436 | 3 |
CAACGCA | 7535 | 0.0 | 34.374695 | 5 |
TATCAAC | 7910 | 0.0 | 33.340034 | 2 |
AACGCAG | 7850 | 0.0 | 33.10602 | 6 |
ACGCAGA | 8980 | 0.0 | 28.730787 | 7 |
CGCAGAG | 8995 | 0.0 | 28.577179 | 8 |
GTACATG | 5740 | 0.0 | 26.555317 | 1 |
GCAGAGT | 10160 | 0.0 | 25.069105 | 9 |
TACATGG | 5890 | 0.0 | 24.901125 | 2 |
ACATGGG | 6125 | 0.0 | 23.407995 | 3 |
ACCGTCC | 170 | 3.4588647E-6 | 22.114355 | 8 |
GAGTACT | 6985 | 0.0 | 21.595928 | 12-13 |
AGAGTAC | 8960 | 0.0 | 20.900349 | 10-11 |
CAGAGTA | 10115 | 0.0 | 20.000484 | 10-11 |
AGTACTT | 7435 | 0.0 | 18.961536 | 12-13 |
GTACTTT | 7940 | 0.0 | 18.820877 | 14-15 |
CGTACAC | 205 | 1.739798E-5 | 18.34453 | 3 |