Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033134_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2005529 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3830 | 0.1909720577463602 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3031 | 0.15113219504679315 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2770 | 0.0 | 52.326412 | 1 |
GTATCAA | 5180 | 0.0 | 39.701023 | 1 |
ATCAACG | 6035 | 0.0 | 33.57755 | 3 |
TCAACGC | 6035 | 0.0 | 33.499645 | 4 |
CAACGCA | 6205 | 0.0 | 32.429497 | 5 |
AACGCAG | 6380 | 0.0 | 31.600264 | 6 |
TATCAAC | 6470 | 0.0 | 31.321583 | 2 |
ACGCAGA | 7150 | 0.0 | 28.197159 | 7 |
CGCAGAG | 7260 | 0.0 | 27.510315 | 8 |
TACGTCG | 70 | 0.008823647 | 26.865822 | 5 |
TAGACCG | 90 | 9.5022155E-4 | 26.11955 | 5 |
GTACATG | 5360 | 0.0 | 25.637053 | 1 |
TACATGG | 5450 | 0.0 | 25.277946 | 2 |
GCAGAGT | 8145 | 0.0 | 24.290377 | 9 |
ACATGGG | 5655 | 0.0 | 23.528965 | 3 |
TATACCG | 120 | 1.8346879E-4 | 23.507595 | 5 |
GAGTACT | 5585 | 0.0 | 21.709269 | 12-13 |
ACGTCGC | 110 | 0.0030621197 | 21.361483 | 6 |
CAGAGTA | 8105 | 0.0 | 20.64145 | 10-11 |
GAGCGTA | 140 | 5.2168046E-4 | 20.140326 | 9 |