Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033133_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1102269 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2374 | 0.21537392415100126 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2165 | 0.19641303529356266 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1136 | 0.10306014230646059 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 3905 | 0.0 | 33.26209 | 1 |
GGTATCA | 2525 | 0.0 | 32.616558 | 1 |
GTCTCGC | 285 | 0.0 | 28.071491 | 1 |
ATCAACG | 4590 | 0.0 | 27.549143 | 3 |
CAACGCA | 4635 | 0.0 | 27.484514 | 5 |
TCAACGC | 4620 | 0.0 | 27.472002 | 4 |
CAGCGCG | 70 | 0.008842546 | 26.852982 | 9 |
AACGCAG | 4830 | 0.0 | 26.370102 | 6 |
TATCAAC | 4860 | 0.0 | 25.921913 | 2 |
GTACATG | 3050 | 0.0 | 24.379158 | 1 |
ACGCAGA | 5225 | 0.0 | 24.196674 | 7 |
CGCAGAG | 5240 | 0.0 | 24.034443 | 8 |
TATACTG | 630 | 0.0 | 23.876898 | 5 |
TACATGG | 3055 | 0.0 | 23.080677 | 2 |
GAGTACT | 3375 | 0.0 | 22.695744 | 12-13 |
TCTGTCG | 275 | 6.002665E-11 | 22.21474 | 8 |
ACACCGT | 150 | 3.2916934E-5 | 21.93292 | 6 |
ACTCCGC | 110 | 0.0030622156 | 21.360327 | 8 |
AGAGTAC | 4720 | 0.0 | 21.3558 | 10-11 |
ACATGGG | 3250 | 0.0 | 21.26192 | 3 |