Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033131_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2016978 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1495 | 0.0 | 36.536404 | 1 |
GTATCAA | 2365 | 0.0 | 33.0511 | 1 |
TCAACGC | 2220 | 0.0 | 32.80327 | 4 |
ATCAACG | 2325 | 0.0 | 31.324165 | 3 |
CAACGCA | 2345 | 0.0 | 31.25505 | 5 |
AACGCAG | 2610 | 0.0 | 28.250443 | 6 |
TATCAAC | 2735 | 0.0 | 27.33593 | 2 |
TATACCG | 70 | 0.0088534085 | 26.847286 | 5 |
GTACATG | 5010 | 0.0 | 26.128595 | 1 |
TACATGG | 4965 | 0.0 | 24.5287 | 2 |
ACGCAGA | 2955 | 0.0 | 24.15751 | 7 |
TACGACC | 160 | 2.0465977E-6 | 23.491373 | 4 |
CGCAGAG | 3115 | 0.0 | 22.464375 | 8 |
ACATGGG | 5320 | 0.0 | 22.344961 | 3 |
TAGACCG | 110 | 0.003066858 | 21.355795 | 5 |
TATACGG | 200 | 5.988768E-7 | 21.142237 | 5 |
CTGTCGC | 540 | 0.0 | 20.003233 | 9 |
TCTGTCG | 545 | 0.0 | 19.819717 | 8 |
GAGTACA | 3885 | 0.0 | 19.150278 | 1 |
ATAACCG | 125 | 0.006426415 | 18.793098 | 5 |