Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033130_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2369819 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3911 | 0.16503370088601704 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3362 | 0.14186737468135752 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3305 | 0.0 | 50.27578 | 1 |
GTATCAA | 5655 | 0.0 | 41.53589 | 1 |
ATCAACG | 6620 | 0.0 | 34.870342 | 3 |
TCAACGC | 6640 | 0.0 | 34.765312 | 4 |
CAACGCA | 6835 | 0.0 | 33.704685 | 5 |
AACGCAG | 6950 | 0.0 | 33.20061 | 6 |
TATCAAC | 7285 | 0.0 | 31.817003 | 2 |
ACGCAGA | 8120 | 0.0 | 28.358904 | 7 |
CGCAGAG | 8285 | 0.0 | 27.90698 | 8 |
GTACATG | 6015 | 0.0 | 27.546255 | 1 |
TACATGG | 6270 | 0.0 | 24.895016 | 2 |
GCAGAGT | 9440 | 0.0 | 23.895136 | 9 |
ACATGGG | 6340 | 0.0 | 23.5073 | 3 |
GTGGTAT | 1680 | 0.0 | 22.975245 | 1 |
TATAACG | 180 | 5.652644E-6 | 20.895819 | 2 |
TGGTATC | 1625 | 0.0 | 20.831522 | 2 |
GAGTACT | 6505 | 0.0 | 20.769728 | 12-13 |
CAGAGTA | 9330 | 0.0 | 20.248117 | 10-11 |
AGAGTAC | 8740 | 0.0 | 19.894386 | 10-11 |
CATGGGG | 4405 | 0.0 | 19.745064 | 4 |