Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033129_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3309615 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5280 | 0.15953517252006655 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4302 | 0.12998490761009968 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4885 | 0.0 | 42.096592 | 1 |
GTATCAA | 7580 | 0.0 | 39.297466 | 1 |
TCAACGC | 9150 | 0.0 | 31.905617 | 4 |
ATCAACG | 9345 | 0.0 | 31.390768 | 3 |
CAACGCA | 9435 | 0.0 | 30.94279 | 5 |
TATCAAC | 9650 | 0.0 | 30.593487 | 2 |
AACGCAG | 9635 | 0.0 | 30.387516 | 6 |
GTACATG | 10730 | 0.0 | 26.532963 | 1 |
ACGCAGA | 11240 | 0.0 | 25.67207 | 7 |
TACATGG | 11235 | 0.0 | 25.231375 | 2 |
CGCAGAG | 11675 | 0.0 | 24.755432 | 8 |
ACATGGG | 10925 | 0.0 | 24.74247 | 3 |
GCAGAGT | 12990 | 0.0 | 22.140528 | 9 |
GAGTACT | 7295 | 0.0 | 19.71191 | 12-13 |
GAGTACA | 7345 | 0.0 | 19.476543 | 1 |
AGAGTAC | 11650 | 0.0 | 19.281807 | 10-11 |
CATGGGG | 8435 | 0.0 | 18.837717 | 4 |
GTGGTAT | 2425 | 0.0 | 18.629002 | 1 |
AGTACTT | 7555 | 0.0 | 18.349327 | 12-13 |
TATACTG | 1705 | 0.0 | 18.198236 | 5 |