Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033128_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3051892 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCAACGC | 3490 | 0.0 | 32.170315 | 4 |
GTATCAA | 3895 | 0.0 | 30.968 | 1 |
ATCAACG | 3650 | 0.0 | 30.896915 | 3 |
CAACGCA | 3765 | 0.0 | 29.695301 | 5 |
GTACATG | 7940 | 0.0 | 27.415876 | 1 |
AACGCAG | 4120 | 0.0 | 27.353876 | 6 |
GGTATCA | 2605 | 0.0 | 26.769156 | 1 |
TACATGG | 7755 | 0.0 | 26.434134 | 2 |
TATCAAC | 4665 | 0.0 | 24.894629 | 2 |
ACATGGG | 8270 | 0.0 | 24.091127 | 3 |
ACGCAGA | 4860 | 0.0 | 22.802402 | 7 |
CGCAGAG | 4900 | 0.0 | 22.137465 | 8 |
CATGGGG | 5165 | 0.0 | 18.918026 | 4 |
GAGTACA | 5760 | 0.0 | 18.814213 | 1 |
GCAGAGT | 5840 | 0.0 | 17.609346 | 9 |
TGCACCG | 350 | 1.5224941E-9 | 17.448215 | 5 |
GTGTACG | 315 | 1.4713441E-7 | 16.453669 | 1 |
AGTACAT | 6170 | 0.0 | 16.30756 | 2 |
AGAGTAC | 4980 | 0.0 | 15.281339 | 5 |
TACACTG | 2080 | 0.0 | 15.1316805 | 5 |