Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033123_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2862127 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6251 | 0.2184040051332453 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4904 | 0.17134110401110783 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4225 | 0.0 | 53.683235 | 1 |
GTATCAA | 8060 | 0.0 | 44.837822 | 1 |
TCAACGC | 9530 | 0.0 | 37.591805 | 4 |
ATCAACG | 9595 | 0.0 | 37.43514 | 3 |
CAACGCA | 9940 | 0.0 | 36.08853 | 5 |
AACGCAG | 10250 | 0.0 | 34.93777 | 6 |
TATCAAC | 10565 | 0.0 | 34.220623 | 2 |
ACGCAGA | 12105 | 0.0 | 29.506174 | 7 |
CGCAGAG | 12350 | 0.0 | 28.805662 | 8 |
GTACATG | 9590 | 0.0 | 27.723509 | 1 |
TACATGG | 9445 | 0.0 | 26.829828 | 2 |
GCAGAGT | 14020 | 0.0 | 24.972221 | 9 |
ACATGGG | 10155 | 0.0 | 24.58361 | 3 |
GAGTACT | 8985 | 0.0 | 21.549047 | 12-13 |
GTGGTAT | 2170 | 0.0 | 21.25126 | 1 |
TATACTG | 1685 | 0.0 | 21.205317 | 5 |
CAGAGTA | 13545 | 0.0 | 20.730408 | 10-11 |
AGAGTAC | 12675 | 0.0 | 20.336565 | 10-11 |
CATGGGG | 6200 | 0.0 | 20.170702 | 4 |
TAGTACG | 330 | 3.274181E-11 | 19.94551 | 4 |