Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033122_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1181887 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2293 | 0.19401177946791867 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1843 | 0.15593707351041175 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1920 | 0.0 | 45.59333 | 1 |
GTATCAA | 3325 | 0.0 | 36.80199 | 1 |
GTACACG | 95 | 9.3507697E-7 | 34.6788 | 1 |
TCAACGC | 3615 | 0.0 | 33.03355 | 4 |
ATCAACG | 3645 | 0.0 | 32.89065 | 3 |
CAACGCA | 3735 | 0.0 | 32.09675 | 5 |
TATCAAC | 3970 | 0.0 | 30.553362 | 2 |
AACGCAG | 3940 | 0.0 | 30.534428 | 6 |
GTACATG | 2940 | 0.0 | 26.5736 | 1 |
ACGCAGA | 4545 | 0.0 | 26.573286 | 7 |
CGCAGAG | 4645 | 0.0 | 26.101273 | 8 |
TCTGTCG | 525 | 0.0 | 25.95771 | 8 |
TACATGG | 3030 | 0.0 | 25.291512 | 2 |
ACATGGG | 3035 | 0.0 | 23.855684 | 3 |
GTCTCGC | 345 | 0.0 | 23.191 | 1 |
CTGTCGC | 610 | 0.0 | 23.11102 | 9 |
GCAGAGT | 5250 | 0.0 | 23.0039 | 9 |
GAGTACT | 3655 | 0.0 | 20.956942 | 12-13 |
GTACTAG | 270 | 1.1241355E-9 | 20.917372 | 1 |
GTCTTAC | 415 | 0.0 | 20.413338 | 1 |