Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033118_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 845885 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1585 | 0.1873777168291198 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1492 | 0.1763833145167487 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1635 | 0.0 | 42.57444 | 1 |
GTCTCGC | 325 | 0.0 | 36.179424 | 1 |
TCTGTCG | 390 | 0.0 | 32.532608 | 8 |
GTATCAA | 2605 | 0.0 | 31.957335 | 1 |
TATAACG | 75 | 3.2714583E-4 | 31.338816 | 2 |
TTACGCT | 60 | 0.0041580102 | 31.336958 | 4 |
CTGTCGC | 420 | 0.0 | 30.208853 | 9 |
TCTCGCT | 375 | 0.0 | 30.08526 | 2 |
ATAACGC | 100 | 5.3176947E-5 | 28.203264 | 3 |
TCGCTCT | 425 | 0.0 | 27.650259 | 4 |
ATCAACG | 2945 | 0.0 | 27.29348 | 3 |
TCAACGC | 2945 | 0.0 | 27.29348 | 4 |
TATCAAC | 3060 | 0.0 | 26.883785 | 2 |
CAACGCA | 3015 | 0.0 | 26.659801 | 5 |
AACGCAG | 3095 | 0.0 | 26.114851 | 6 |
GTACATG | 2290 | 0.0 | 25.262403 | 1 |
CGCTCTG | 355 | 0.0 | 25.15784 | 5 |
TACATGG | 2250 | 0.0 | 24.862127 | 2 |
CTCGCTC | 435 | 0.0 | 24.85345 | 3 |
ACATGGG | 2210 | 0.0 | 24.24715 | 3 |