Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033117_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2858876 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5200 | 0.18188966572876894 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4275 | 0.1495342924981706 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4250 | 0.0 | 45.400326 | 1 |
GTATCAA | 6970 | 0.0 | 43.34772 | 1 |
ATCAACG | 8135 | 0.0 | 36.465923 | 3 |
TCAACGC | 8165 | 0.0 | 36.216785 | 4 |
CAACGCA | 8325 | 0.0 | 35.464256 | 5 |
AACGCAG | 8585 | 0.0 | 34.43292 | 6 |
TATCAAC | 8680 | 0.0 | 34.23047 | 2 |
ACGCAGA | 9890 | 0.0 | 29.461777 | 7 |
CGCAGAG | 9875 | 0.0 | 29.361187 | 8 |
GCAGAGT | 11135 | 0.0 | 26.123173 | 9 |
GTACATG | 7565 | 0.0 | 25.381384 | 1 |
ACATGGG | 7135 | 0.0 | 24.11585 | 3 |
TACATGG | 7650 | 0.0 | 23.967274 | 2 |
ACCGTCC | 270 | 4.7293724E-11 | 22.625862 | 8 |
GAGTACT | 7715 | 0.0 | 21.836287 | 12-13 |
GTGGTAT | 2135 | 0.0 | 21.822342 | 1 |
AGAGTAC | 10560 | 0.0 | 20.603577 | 10-11 |
CATGGGG | 5200 | 0.0 | 19.890001 | 4 |
CAGAGTA | 11655 | 0.0 | 19.857267 | 10-11 |
AGTACTT | 8195 | 0.0 | 19.525118 | 12-13 |