Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033116_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2176424 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 2810 | 0.0 | 34.874306 | 1 |
TCAACGC | 2860 | 0.0 | 32.5258 | 4 |
CAACGCA | 3000 | 0.0 | 31.00793 | 5 |
ATCAACG | 3045 | 0.0 | 30.55952 | 3 |
GTACATG | 7330 | 0.0 | 29.823772 | 1 |
GGTATCA | 1975 | 0.0 | 29.341791 | 1 |
AACGCAG | 3240 | 0.0 | 28.70049 | 6 |
TACATGG | 7470 | 0.0 | 28.384705 | 2 |
TATCAAC | 3465 | 0.0 | 27.815 | 2 |
ACATGGG | 7610 | 0.0 | 26.308348 | 3 |
CATGGGG | 5075 | 0.0 | 22.125378 | 4 |
ACGCAGA | 4120 | 0.0 | 22.000334 | 7 |
TATACCG | 150 | 3.3124088E-5 | 21.916739 | 6 |
CCGATCG | 130 | 3.1771138E-4 | 21.675894 | 9 |
TAACCGT | 175 | 4.4704684E-6 | 21.469458 | 7 |
TACGCGA | 80 | 5.459578E-5 | 20.54175 | 80-81 |
TAGACCG | 115 | 0.0039686896 | 20.426832 | 5 |
ACCGTCC | 230 | 1.01777914E-7 | 20.419321 | 8 |
CGCAGAG | 4375 | 0.0 | 20.18129 | 8 |
ATACCGC | 225 | 1.8603077E-6 | 18.785774 | 7 |