Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033115_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2347635 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4102 | 0.17472903581689658 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3285 | 0.1399280552556083 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2915 | 0.0 | 50.849426 | 1 |
GTATCAA | 5735 | 0.0 | 45.045666 | 1 |
TCAACGC | 6725 | 0.0 | 37.68094 | 4 |
ATCAACG | 6840 | 0.0 | 37.047413 | 3 |
CAACGCA | 6895 | 0.0 | 36.752674 | 5 |
AACGCAG | 7215 | 0.0 | 35.237926 | 6 |
TATCAAC | 7240 | 0.0 | 35.195404 | 2 |
ACGCAGA | 8340 | 0.0 | 30.540958 | 7 |
CGCAGAG | 8405 | 0.0 | 30.13639 | 8 |
TAGACCG | 65 | 0.006146004 | 28.932177 | 5 |
GCAGAGT | 9545 | 0.0 | 26.192434 | 9 |
GTACATG | 5310 | 0.0 | 24.90152 | 1 |
TGGTATC | 1495 | 0.0 | 23.899984 | 2 |
GTGGTAT | 1755 | 0.0 | 23.326855 | 1 |
TACATGG | 5645 | 0.0 | 22.486666 | 2 |
AGAGTAC | 8860 | 0.0 | 21.693508 | 10-11 |
ACATGGG | 5650 | 0.0 | 21.634663 | 3 |
GAGTACT | 6960 | 0.0 | 21.437069 | 12-13 |
GTAACGG | 135 | 4.0707318E-4 | 20.895016 | 3 |
GGACCGT | 180 | 5.6743374E-6 | 20.886559 | 6 |