Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033112_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1352036 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3057 | 0.22610344694963744 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2644 | 0.19555692304051076 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1409 | 0.10421320142363073 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2145 | 0.0 | 49.356213 | 1 |
GTATCAA | 3740 | 0.0 | 38.62365 | 1 |
ATCAACG | 4550 | 0.0 | 31.201841 | 3 |
TCAACGC | 4570 | 0.0 | 31.065292 | 4 |
CAACGCA | 4730 | 0.0 | 30.113842 | 5 |
AACGCAG | 4865 | 0.0 | 29.269545 | 6 |
TATCAAC | 4980 | 0.0 | 28.41331 | 2 |
CGCGATT | 35 | 0.008823114 | 26.86649 | 34-35 |
GTACATG | 3625 | 0.0 | 26.090033 | 1 |
ACGCAGA | 5555 | 0.0 | 25.633902 | 7 |
CGCAGAG | 5585 | 0.0 | 25.241905 | 8 |
TATAACG | 95 | 0.001303185 | 24.741789 | 2 |
TACATGG | 3780 | 0.0 | 24.375242 | 2 |
GTGGTAT | 1220 | 0.0 | 24.297817 | 1 |
TGGTATC | 1150 | 0.0 | 23.709087 | 2 |
GCAGAGT | 6175 | 0.0 | 22.600988 | 9 |
GTACGAC | 125 | 2.4204626E-4 | 22.56451 | 3 |
CCGGTCG | 125 | 2.4271382E-4 | 22.555332 | 9 |
ACATGGG | 3975 | 0.0 | 22.351639 | 3 |
GTCTCGC | 345 | 0.0 | 21.821642 | 1 |