Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033106_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1698950 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3262 | 0.19200094175814475 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2810 | 0.16539627416933989 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2930 | 0.0 | 42.557747 | 1 |
GTATCAA | 5165 | 0.0 | 38.080826 | 1 |
ATCAACG | 5830 | 0.0 | 32.977688 | 3 |
TCAACGC | 5830 | 0.0 | 32.977688 | 4 |
CAACGCA | 5930 | 0.0 | 32.42157 | 5 |
AACGCAG | 6125 | 0.0 | 31.379213 | 6 |
TATCAAC | 6290 | 0.0 | 30.790167 | 2 |
ACGCAGA | 7150 | 0.0 | 26.815073 | 7 |
CGCAGAG | 7300 | 0.0 | 26.199703 | 8 |
GTACATG | 4580 | 0.0 | 24.14364 | 1 |
GCAGAGT | 7905 | 0.0 | 23.897308 | 9 |
TACATGG | 4625 | 0.0 | 22.970062 | 2 |
GAGTACT | 5195 | 0.0 | 21.076342 | 12-13 |
ACATGGG | 4920 | 0.0 | 20.63736 | 3 |
GGACCGT | 160 | 5.4218304E-5 | 20.559042 | 6 |
AGAGTAC | 7020 | 0.0 | 20.550676 | 10-11 |
TATACCG | 120 | 0.0050605526 | 19.58638 | 5 |
CAGAGTA | 7790 | 0.0 | 19.394043 | 10-11 |
AGTACTT | 5590 | 0.0 | 19.124691 | 12-13 |
CATGGGG | 2835 | 0.0 | 18.7366 | 4 |