FastQCFastQC Report
Wed 25 May 2016
SRR1033104_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1033104_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2631000
Sequences flagged as poor quality0
Sequence length100
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT43830.16659064994298747No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT37390.14211326491828202No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA39850.050.416271
GTATCAA67000.040.3798071
TCAACGC77800.034.2651374
ATCAACG78050.034.2156263
CAACGCA80250.033.2190365
AACGCAG81800.032.573486
TATCAAC82750.032.385892
ACGCAGA95000.027.8990787
CGCAGAG98050.026.9833078
GTACATG73050.026.214731
TACATGG76100.024.774722
ACATGGG74400.024.266513
GCAGAGT110200.023.6240469
GTGGTAT18200.022.4915331
GAGTACT72250.021.65870712-13
CAGAGTA107850.020.45698210-11
GTACTTT79450.019.75507514-15
AGAGTAC101050.019.48515310-11
CATGGGG50550.019.252994
CGCGCGT1250.00641873218.797257