Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033097_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 410933 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 2170 | 0.5280666191325594 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACGTGCG | 55 | 8.7027547E-7 | 51.352856 | 9 |
GCTATCC | 80 | 2.4468318E-7 | 41.139076 | 3 |
CGGATTC | 60 | 8.733434E-5 | 39.227875 | 9 |
GCGGATT | 60 | 8.752289E-5 | 39.21352 | 8 |
TTAGCGG | 60 | 8.790098E-5 | 39.18485 | 5 |
TAGCGGA | 65 | 1.410078E-4 | 36.161816 | 6 |
GTCCTAA | 105 | 2.0477855E-6 | 31.359343 | 1 |
GCCGTAT | 140 | 1.900844E-8 | 30.18784 | 94 |
AGCGGAT | 80 | 4.7694327E-4 | 29.381472 | 7 |
GTACATG | 1725 | 0.0 | 27.268993 | 1 |
GCCTTAC | 70 | 0.00879386 | 26.879438 | 1 |
TCTCGCT | 140 | 6.3325933E-7 | 26.866337 | 2 |
CGTGCGC | 90 | 1.3123832E-4 | 26.14235 | 8 |
CTATCCC | 110 | 1.0144117E-4 | 25.645138 | 4 |
TACATGG | 1710 | 0.0 | 25.020256 | 2 |
GTATCAA | 1330 | 0.0 | 24.757376 | 1 |
TAAGGTA | 115 | 1.3707772E-4 | 24.533121 | 5 |
CTCGCTC | 140 | 1.9222993E-5 | 23.508045 | 3 |
ACACGTG | 120 | 1.832505E-4 | 23.505177 | 7 |
GGTATCA | 1025 | 0.0 | 23.40478 | 1 |