Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033096_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3797871 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7058 | 0.18584096194947117 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5475 | 0.14415971474544553 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 5115 | 0.0 | 53.805687 | 1 |
GTATCAA | 9815 | 0.0 | 45.421535 | 1 |
ATCAACG | 11915 | 0.0 | 36.764294 | 3 |
TCAACGC | 11925 | 0.0 | 36.693565 | 4 |
CAACGCA | 12220 | 0.0 | 35.845745 | 5 |
AACGCAG | 12790 | 0.0 | 34.39523 | 6 |
TATCAAC | 12965 | 0.0 | 33.9712 | 2 |
ACGCAGA | 14685 | 0.0 | 29.700716 | 7 |
CCGATCG | 175 | 1.72804E-10 | 29.542133 | 9 |
CGCAGAG | 15160 | 0.0 | 28.584484 | 8 |
GTACATG | 11725 | 0.0 | 26.205696 | 1 |
GCAGAGT | 16890 | 0.0 | 25.405535 | 9 |
TACATGG | 11670 | 0.0 | 25.227892 | 2 |
ACATGGG | 12050 | 0.0 | 23.324831 | 3 |
AGAGTAC | 15670 | 0.0 | 21.414776 | 10-11 |
GTGGTAT | 2375 | 0.0 | 21.231522 | 1 |
CAGAGTA | 16735 | 0.0 | 20.374926 | 10-11 |
GAGTACT | 11300 | 0.0 | 20.171541 | 12-13 |
AGTACTT | 11710 | 0.0 | 19.324808 | 12-13 |
CATGGGG | 8680 | 0.0 | 19.222385 | 4 |