Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033090_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2060164 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3979 | 0.1931399636145472 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3313 | 0.1608124401746657 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2790 | 0.0 | 51.022182 | 1 |
GTATCAA | 5370 | 0.0 | 42.92308 | 1 |
ATCAACG | 6090 | 0.0 | 37.27877 | 3 |
TCAACGC | 6105 | 0.0 | 37.26145 | 4 |
CAACGCA | 6275 | 0.0 | 36.24934 | 5 |
TATCAAC | 6485 | 0.0 | 35.16083 | 2 |
AACGCAG | 6540 | 0.0 | 34.92424 | 6 |
ACGCAGA | 7740 | 0.0 | 29.206034 | 7 |
CGCAGAG | 7875 | 0.0 | 28.70536 | 8 |
GTACATG | 5565 | 0.0 | 28.036198 | 1 |
TACATGG | 5590 | 0.0 | 26.126045 | 2 |
GCAGAGT | 8605 | 0.0 | 26.051695 | 9 |
GTGGTAT | 1500 | 0.0 | 25.453648 | 1 |
ACATGGG | 5670 | 0.0 | 24.45517 | 3 |
ATAACGC | 135 | 1.4572897E-5 | 24.372272 | 3 |
TGGTATC | 1530 | 0.0 | 22.169956 | 2 |
CAGAGTA | 8490 | 0.0 | 20.896702 | 10-11 |
GAGTACT | 6245 | 0.0 | 20.80829 | 12-13 |
AGAGTAC | 8075 | 0.0 | 20.573841 | 10-11 |
GAGTACA | 3940 | 0.0 | 20.338036 | 1 |