Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033089_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4460350 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 5700 | 0.0 | 36.04629 | 1 |
GGTATCA | 3500 | 0.0 | 34.389507 | 1 |
TCAACGC | 5615 | 0.0 | 33.91094 | 4 |
ATCAACG | 5830 | 0.0 | 32.90229 | 3 |
CAACGCA | 5800 | 0.0 | 32.66754 | 5 |
AACGCAG | 6085 | 0.0 | 31.283958 | 6 |
GTACATG | 12865 | 0.0 | 29.127455 | 1 |
TATCAAC | 6950 | 0.0 | 28.614758 | 2 |
TACATGG | 13095 | 0.0 | 27.322073 | 2 |
ACATGGG | 13605 | 0.0 | 25.433949 | 3 |
ACGCAGA | 7485 | 0.0 | 25.11973 | 7 |
CGCAGAG | 7685 | 0.0 | 24.058363 | 8 |
TACACCG | 675 | 0.0 | 22.288742 | 5 |
CATGGGG | 10060 | 0.0 | 21.451084 | 4 |
CCGATCG | 180 | 5.61259E-6 | 20.913776 | 9 |
GCAGAGT | 9285 | 0.0 | 19.359604 | 9 |
GAGTACA | 9120 | 0.0 | 18.404642 | 1 |
GTATATA | 3020 | 0.0 | 17.592417 | 1 |
TACGACC | 360 | 2.1918822E-9 | 16.977564 | 4 |
AGTACAT | 9235 | 0.0 | 16.290995 | 2 |