Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033085_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3973594 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 4700 | 0.0 | 35.307133 | 1 |
TCAACGC | 4680 | 0.0 | 33.244816 | 4 |
ATCAACG | 4765 | 0.0 | 32.750427 | 3 |
CAACGCA | 4765 | 0.0 | 32.55314 | 5 |
GGTATCA | 2990 | 0.0 | 31.601698 | 1 |
AACGCAG | 4935 | 0.0 | 31.329401 | 6 |
TATCAAC | 5435 | 0.0 | 29.664454 | 2 |
GTACATG | 10770 | 0.0 | 28.371561 | 1 |
TACATGG | 10820 | 0.0 | 26.586794 | 2 |
ACGCAGA | 5905 | 0.0 | 25.785402 | 7 |
ACATGGG | 11040 | 0.0 | 24.737104 | 3 |
CGCAGAG | 6225 | 0.0 | 24.408371 | 8 |
CATGGGG | 8290 | 0.0 | 21.376108 | 4 |
GAGTACA | 7505 | 0.0 | 19.542921 | 1 |
GCAGAGT | 7815 | 0.0 | 18.66339 | 9 |
AGTACAT | 7425 | 0.0 | 17.662394 | 2 |
TATACTG | 2345 | 0.0 | 17.63931 | 5 |
AGAGTAC | 6315 | 0.0 | 16.098318 | 10-11 |
TACACTG | 2950 | 0.0 | 15.774477 | 5 |
GTATAGG | 1615 | 0.0 | 15.718345 | 1 |