Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033081_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2125358 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4332 | 0.20382448509851048 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3577 | 0.16830105798646627 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3275 | 0.0 | 55.265797 | 1 |
GTATCAA | 6080 | 0.0 | 42.715405 | 1 |
TCAACGC | 7280 | 0.0 | 34.92642 | 4 |
ATCAACG | 7330 | 0.0 | 34.882996 | 3 |
CAACGCA | 7425 | 0.0 | 34.179447 | 5 |
TATCAAC | 7700 | 0.0 | 33.351017 | 2 |
AACGCAG | 7800 | 0.0 | 32.65671 | 6 |
ACGCAGA | 8920 | 0.0 | 28.398254 | 7 |
CGCAGAG | 9115 | 0.0 | 27.584486 | 8 |
GTGGTAT | 1555 | 0.0 | 26.370926 | 1 |
TGGTATC | 1520 | 0.0 | 26.039883 | 2 |
GCAGAGT | 10045 | 0.0 | 24.796686 | 9 |
GTACATG | 5655 | 0.0 | 24.588152 | 1 |
TACATGG | 5725 | 0.0 | 22.96318 | 2 |
ACACCGT | 400 | 0.0 | 21.148533 | 6 |
AGAGTAC | 9360 | 0.0 | 21.13849 | 10-11 |
ACATGGG | 6010 | 0.0 | 21.037622 | 3 |
CAGAGTA | 9805 | 0.0 | 21.017921 | 10-11 |
GAGTACT | 7210 | 0.0 | 20.858469 | 12-13 |
TATAACG | 215 | 1.1661632E-6 | 19.724562 | 2 |