Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033079_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2793776 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4221 | 0.1510858422436158 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3547 | 0.1269607871210863 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3775 | 0.0 | 51.308258 | 1 |
GTATCAA | 6550 | 0.0 | 42.305653 | 1 |
TCAACGC | 7600 | 0.0 | 35.86946 | 4 |
ATCAACG | 7635 | 0.0 | 35.768513 | 3 |
CAACGCA | 7770 | 0.0 | 35.203133 | 5 |
AACGCAG | 8045 | 0.0 | 33.94077 | 6 |
TATCAAC | 8245 | 0.0 | 33.253616 | 2 |
ACGCAGA | 9320 | 0.0 | 28.9446 | 7 |
CGCAGAG | 9350 | 0.0 | 28.700937 | 8 |
GTACATG | 6810 | 0.0 | 27.057772 | 1 |
GTGGTAT | 1745 | 0.0 | 27.006416 | 1 |
TACATGG | 6930 | 0.0 | 25.220125 | 2 |
GCAGAGT | 10860 | 0.0 | 24.450638 | 9 |
ACATGGG | 6900 | 0.0 | 24.183157 | 3 |
GAGTACT | 7585 | 0.0 | 21.283672 | 12-13 |
AGAGTAC | 9975 | 0.0 | 20.40077 | 10-11 |
CAGAGTA | 11080 | 0.0 | 19.99924 | 10-11 |
TGGTATC | 2075 | 0.0 | 19.97888 | 2 |
AGTACTT | 8200 | 0.0 | 18.627089 | 12-13 |
GTACTTT | 8775 | 0.0 | 18.504623 | 14-15 |