Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033078_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2238668 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4442 | 0.19842156139275677 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3719 | 0.16612557109852824 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3280 | 0.0 | 54.90212 | 1 |
GTATCAA | 5935 | 0.0 | 41.700203 | 1 |
TCAACGC | 7320 | 0.0 | 33.449936 | 4 |
ATCAACG | 7340 | 0.0 | 33.35954 | 3 |
TATCAAC | 7430 | 0.0 | 33.09929 | 2 |
CAACGCA | 7490 | 0.0 | 32.691456 | 5 |
AACGCAG | 7625 | 0.0 | 32.174294 | 6 |
ACGCAGA | 8840 | 0.0 | 27.645819 | 7 |
TCGCGTG | 35 | 0.008841603 | 26.855337 | 60-61 |
CGCAGAG | 9100 | 0.0 | 26.753242 | 8 |
GTACATG | 5830 | 0.0 | 24.985582 | 1 |
TACATGG | 5925 | 0.0 | 23.77496 | 2 |
GCAGAGT | 10210 | 0.0 | 23.614552 | 9 |
ACATGGG | 6075 | 0.0 | 22.976746 | 3 |
GTGGTAT | 1525 | 0.0 | 22.565897 | 1 |
TCTGTCG | 605 | 0.0 | 21.751574 | 8 |
CTGTCGC | 685 | 0.0 | 21.269594 | 9 |
GAGTACT | 7130 | 0.0 | 20.829592 | 12-13 |
TGGTATC | 1535 | 0.0 | 20.563799 | 2 |
AGAGTAC | 9160 | 0.0 | 20.44659 | 10-11 |