Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033076_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2510820 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4296 | 0.17109948144430903 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3631 | 0.1446141101313515 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3745 | 0.0 | 48.076134 | 1 |
GTATCAA | 6845 | 0.0 | 42.346706 | 1 |
TCAACGC | 8110 | 0.0 | 35.00152 | 4 |
ATCAACG | 8210 | 0.0 | 34.579323 | 3 |
CAACGCA | 8325 | 0.0 | 34.097576 | 5 |
TATCAAC | 8690 | 0.0 | 32.96049 | 2 |
AACGCAG | 8785 | 0.0 | 32.365658 | 6 |
CCGATCG | 60 | 0.00416318 | 31.331385 | 9 |
ACGCAGA | 10185 | 0.0 | 27.732195 | 7 |
CGCAGAG | 10260 | 0.0 | 27.34625 | 8 |
GTACATG | 6325 | 0.0 | 24.516209 | 1 |
GCAGAGT | 11415 | 0.0 | 24.291086 | 9 |
TACATGG | 6260 | 0.0 | 23.63008 | 2 |
CCGGTCG | 100 | 0.0017598945 | 23.498539 | 9 |
CGCGCAC | 260 | 2.7284841E-11 | 23.498537 | 94 |
CGACGCG | 145 | 5.456968E-12 | 22.688694 | 90-91 |
GTGGTAT | 2000 | 0.0 | 22.38781 | 1 |
ACACCGT | 505 | 0.0 | 22.335243 | 6 |
TACACCG | 365 | 0.0 | 21.889048 | 5 |
AGAGTAC | 10070 | 0.0 | 21.398369 | 10-11 |