Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033065_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5047565 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7765 | 0.15383655287252368 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5937 | 0.11762107075391798 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 6420 | 0.0 | 54.544445 | 1 |
GTATCAA | 12595 | 0.0 | 44.791203 | 1 |
TCAACGC | 15185 | 0.0 | 36.490585 | 4 |
ATCAACG | 15300 | 0.0 | 36.309185 | 3 |
CAACGCA | 15500 | 0.0 | 35.71833 | 5 |
AACGCAG | 16320 | 0.0 | 34.038513 | 6 |
TATCAAC | 16460 | 0.0 | 33.89037 | 2 |
ACGCAGA | 18565 | 0.0 | 29.719833 | 7 |
CGCAGAG | 18665 | 0.0 | 29.40953 | 8 |
GTACATG | 13755 | 0.0 | 26.554482 | 1 |
GCAGAGT | 21015 | 0.0 | 25.762993 | 9 |
TACATGG | 13945 | 0.0 | 25.102945 | 2 |
ACATGGG | 14225 | 0.0 | 23.689579 | 3 |
GAGTACT | 14270 | 0.0 | 21.621195 | 12-13 |
AGAGTAC | 19435 | 0.0 | 21.34044 | 10-11 |
TAGACCG | 180 | 5.673288E-6 | 20.88791 | 5 |
CATGGGG | 9170 | 0.0 | 20.808392 | 4 |
CAGAGTA | 20665 | 0.0 | 20.797997 | 10-11 |
AGTACTT | 15275 | 0.0 | 19.491009 | 12-13 |
ATACCGC | 465 | 0.0 | 19.203213 | 6 |