Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033064_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3657675 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5846 | 0.1598283062327845 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4745 | 0.12972721742637058 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 5215 | 0.0 | 47.909588 | 1 |
GTATCAA | 8920 | 0.0 | 41.222153 | 1 |
TCAACGC | 10555 | 0.0 | 34.50789 | 4 |
ATCAACG | 10745 | 0.0 | 33.898624 | 3 |
CAACGCA | 10915 | 0.0 | 33.412804 | 5 |
TATCAAC | 11190 | 0.0 | 32.593216 | 2 |
AACGCAG | 11310 | 0.0 | 32.328533 | 6 |
ACGCAGA | 13285 | 0.0 | 27.416319 | 7 |
CGCAGAG | 13460 | 0.0 | 26.955118 | 8 |
GTACATG | 9235 | 0.0 | 24.604301 | 1 |
GCAGAGT | 15045 | 0.0 | 23.709293 | 9 |
TACATGG | 9635 | 0.0 | 22.399073 | 2 |
ACATGGG | 9315 | 0.0 | 21.897455 | 3 |
GTGGTAT | 2540 | 0.0 | 20.415491 | 1 |
GAGTACT | 10325 | 0.0 | 20.25545 | 12-13 |
AGAGTAC | 13850 | 0.0 | 19.901564 | 10-11 |
CAGAGTA | 15465 | 0.0 | 18.810907 | 10-11 |
CATGGGG | 6620 | 0.0 | 18.529234 | 4 |
TATACTG | 2260 | 0.0 | 18.29992 | 5 |
AGTACTT | 11050 | 0.0 | 17.969517 | 12-13 |