FastQCFastQC Report
Wed 25 May 2016
SRR1033063_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1033063_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences129490
Sequences flagged as poor quality0
Sequence length100
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA47493.6674646690864163No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3260.2517568924241254No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3130.24171750714340876No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3040.234767163487528No Hit
GAAAACAACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2350.18148119545910882No Hit
GAAACAACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2200.1698972893659742No Hit
ACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1450.11197775890030119No Hit
CTCCTACACCGGTTAACTTCAATGGTGCGTCTATTTTTGGGAGCTGCCAT1340.10348289443200248No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1340.10348289443200248No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAGTCT200.002155631370.524674
TACAAGA301.3642172E-462.68862
CCTAGTC250.005218327556.4197353
TCCTAGT250.005218327556.4197352
TAACAAC1600.047.0346531
GAGAACA2900.045.4127661
GTACAAA1052.1827873E-1144.7949071
GTACATA751.4588841E-743.8990061
CGTATCA608.802644E-539.1500794
CTGTCCT500.001690310837.6277169
TACATAA500.001693529937.613162
TACACTG500.001693529937.613165
ATCTCTA500.001696753937.5986067
GGAAACA1950.036.18051
AGAACAA3050.035.4550252
CTCTTAC550.00269836234.2070161
GAAAACA3650.032.2155151
AATCAAT300.004163702531.32005568-69
ACGCATC300.004163702531.32005554-55
CGCATCC300.004163702531.32005556-57