Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033058_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3415419 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4424 | 0.12953022747721435 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3913 | 0.1145686663920298 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4550 | 0.0 | 44.23038 | 1 |
GTATCAA | 7690 | 0.0 | 43.208282 | 1 |
TCAACGC | 9000 | 0.0 | 36.13697 | 4 |
ATCAACG | 9050 | 0.0 | 35.93679 | 3 |
CAACGCA | 9135 | 0.0 | 35.654896 | 5 |
AACGCAG | 9385 | 0.0 | 34.80527 | 6 |
TATCAAC | 9760 | 0.0 | 33.59384 | 2 |
ACGCAGA | 11000 | 0.0 | 29.438862 | 7 |
CGCAGAG | 11250 | 0.0 | 28.65933 | 8 |
GTACATG | 8685 | 0.0 | 25.071272 | 1 |
GCAGAGT | 12800 | 0.0 | 24.674446 | 9 |
TACATGG | 8580 | 0.0 | 24.213165 | 2 |
ACATGGG | 8715 | 0.0 | 22.973331 | 3 |
GTGGTAT | 2325 | 0.0 | 21.28485 | 1 |
AGAGTAC | 11835 | 0.0 | 20.848557 | 10-11 |
GAGTACT | 8875 | 0.0 | 20.599197 | 12-13 |
CAGAGTA | 12855 | 0.0 | 19.413658 | 10-11 |
CATGGGG | 6490 | 0.0 | 19.118216 | 4 |
GAGTACA | 6290 | 0.0 | 19.107056 | 1 |
AGTACTT | 9490 | 0.0 | 18.744278 | 12-13 |