Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033057_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2800517 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4530 | 0.1617558472239233 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3673 | 0.13115435471379033 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3750 | 0.0 | 53.40546 | 1 |
GTATCAA | 7075 | 0.0 | 42.360264 | 1 |
ATCAACG | 8410 | 0.0 | 34.873116 | 3 |
TCAACGC | 8435 | 0.0 | 34.601357 | 4 |
CAACGCA | 8620 | 0.0 | 33.857544 | 5 |
AACGCAG | 8975 | 0.0 | 32.72779 | 6 |
TATCAAC | 8970 | 0.0 | 32.7166 | 2 |
ACGCAGA | 10335 | 0.0 | 28.239191 | 7 |
CGCAGAG | 10495 | 0.0 | 27.584772 | 8 |
GTGGTAT | 1925 | 0.0 | 24.23441 | 1 |
TATACCG | 175 | 1.6489139E-7 | 24.16994 | 5 |
GTACATG | 7325 | 0.0 | 24.12413 | 1 |
GCAGAGT | 11955 | 0.0 | 24.098059 | 9 |
TACATGG | 7150 | 0.0 | 23.717505 | 2 |
ACATGGG | 7365 | 0.0 | 22.271774 | 3 |
TGGTATC | 1900 | 0.0 | 22.065254 | 2 |
GAGTACT | 8255 | 0.0 | 21.036446 | 12-13 |
AGAGTAC | 10730 | 0.0 | 20.980068 | 10-11 |
CCGGTCG | 115 | 0.003961447 | 20.433525 | 9 |
CAGAGTA | 11690 | 0.0 | 20.141619 | 10-11 |