FastQCFastQC Report
Wed 25 May 2016
SRR1033054_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1033054_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2757633
Sequences flagged as poor quality0
Sequence length100
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT53160.1927740203283033No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT42590.15444404676039197No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA38850.054.4640581
GTATCAA72400.045.433011
ATCAACG87750.036.7428253
TCAACGC87900.036.625324
CAACGCA89850.035.82985
AACGCAG92800.034.7921036
TATCAAC94550.034.3259772
ACGCAGA108650.029.5868197
CGCAGAG110350.028.8760078
GTACATG71300.026.6360721
GCAGAGT125050.025.0681299
TACATGG73350.024.6601832
ACATGGG75450.023.5465933
GTGGTAT18350.023.1132561
TGGTATC18300.022.1366842
GAGTACT88250.021.8880412-13
AGAGTAC115450.021.27022610-11
CAGAGTA123950.020.56993710-11
AGTACTT94800.019.63209312-13
CATGGGG50500.019.3576094