Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033049_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3502118 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4563 | 0.13029258294552037 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3832 | 0.10941949985694371 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4265 | 0.0 | 52.619797 | 1 |
GTATCAA | 7925 | 0.0 | 44.2029 | 1 |
TCAACGC | 9305 | 0.0 | 37.124947 | 4 |
ATCAACG | 9400 | 0.0 | 36.74922 | 3 |
CAACGCA | 9595 | 0.0 | 36.050835 | 5 |
AACGCAG | 10150 | 0.0 | 34.17219 | 6 |
TATCAAC | 10430 | 0.0 | 33.11983 | 2 |
ACGCAGA | 11910 | 0.0 | 28.885628 | 7 |
CGCAGAG | 12050 | 0.0 | 28.43302 | 8 |
GTACATG | 8695 | 0.0 | 25.485285 | 1 |
GCAGAGT | 13860 | 0.0 | 24.346903 | 9 |
TACATGG | 8970 | 0.0 | 23.589697 | 2 |
ACATGGG | 9290 | 0.0 | 21.95648 | 3 |
AGAGTAC | 12530 | 0.0 | 20.835756 | 10-11 |
GAGTACT | 9155 | 0.0 | 20.68777 | 12-13 |
CAGAGTA | 13430 | 0.0 | 20.069368 | 10-11 |
GTCGTAC | 235 | 1.2260898E-7 | 20.062885 | 1 |
ACACCGT | 565 | 0.0 | 19.963896 | 6 |
GTGGTAT | 2265 | 0.0 | 19.566847 | 1 |
AGTACTT | 10110 | 0.0 | 18.501158 | 12-13 |