Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033047_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1888828 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCAACGC | 1955 | 0.0 | 31.741886 | 4 |
ATCAACG | 2030 | 0.0 | 30.569153 | 3 |
CAACGCA | 2035 | 0.0 | 30.49566 | 5 |
GTATCAA | 2220 | 0.0 | 30.283083 | 1 |
AACGCAG | 2180 | 0.0 | 29.105776 | 6 |
GGTATCA | 1485 | 0.0 | 26.276571 | 1 |
GTACATG | 4575 | 0.0 | 25.99839 | 1 |
TACATGG | 4595 | 0.0 | 25.06606 | 2 |
TATCAAC | 2665 | 0.0 | 23.814533 | 2 |
ACGCAGA | 2670 | 0.0 | 22.88411 | 7 |
ACATGGG | 4890 | 0.0 | 22.59251 | 3 |
CGCAGAG | 2710 | 0.0 | 22.218904 | 8 |
GTGTAGG | 695 | 0.0 | 21.646229 | 1 |
GTGTACG | 205 | 7.5454045E-7 | 20.639809 | 1 |
ACGCGTT | 80 | 5.3545293E-5 | 20.593533 | 10-11 |
CTAGTAC | 440 | 0.0 | 20.300486 | 3 |
AGTACCG | 235 | 1.2625605E-7 | 20.00602 | 5 |
GAGTACA | 3245 | 0.0 | 19.993158 | 1 |
CATGGGG | 3405 | 0.0 | 19.605448 | 4 |
GTCTACG | 255 | 2.9833063E-7 | 18.43643 | 1 |