Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033043_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3134947 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4354 | 0.13888592055942253 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3685 | 0.1175458468675866 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3530 | 0.0 | 55.555298 | 1 |
GTATCAA | 7215 | 0.0 | 44.168964 | 1 |
TCAACGC | 8320 | 0.0 | 37.56531 | 4 |
ATCAACG | 8335 | 0.0 | 37.44192 | 3 |
CAACGCA | 8560 | 0.0 | 36.40111 | 5 |
AACGCAG | 9015 | 0.0 | 34.87669 | 6 |
TATCAAC | 9200 | 0.0 | 34.36688 | 2 |
ACGCAGA | 10265 | 0.0 | 30.40073 | 7 |
CGCAGAG | 10480 | 0.0 | 29.507978 | 8 |
GCAGAGT | 11925 | 0.0 | 25.734915 | 9 |
GTACATG | 7710 | 0.0 | 24.457525 | 1 |
TACATGG | 7840 | 0.0 | 22.838783 | 2 |
AGAGTAC | 10910 | 0.0 | 21.624542 | 10-11 |
GAGTACT | 8075 | 0.0 | 21.09762 | 12-13 |
ACATGGG | 8275 | 0.0 | 20.674215 | 3 |
CAGAGTA | 11690 | 0.0 | 20.543495 | 10-11 |
TGGTATC | 1845 | 0.0 | 19.154478 | 2 |
AGTACTT | 8805 | 0.0 | 18.974844 | 12-13 |
GAGTACA | 6060 | 0.0 | 18.825632 | 1 |
TATACTG | 1925 | 0.0 | 18.799007 | 5 |