Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033039_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1868016 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1835 | 0.0 | 31.001266 | 1 |
GTATCAA | 2345 | 0.0 | 28.870201 | 1 |
GTACATG | 5195 | 0.0 | 28.235739 | 1 |
TCAACGC | 2280 | 0.0 | 27.63048 | 4 |
CAACGCA | 2290 | 0.0 | 27.509823 | 5 |
TACATGG | 5115 | 0.0 | 27.297901 | 2 |
ATCAACG | 2365 | 0.0 | 26.637419 | 3 |
AACGCAG | 2475 | 0.0 | 25.827206 | 6 |
ACATGGG | 5255 | 0.0 | 25.586552 | 3 |
GTACGAC | 160 | 2.035018E-6 | 23.506529 | 3 |
TATCAAC | 2870 | 0.0 | 22.441772 | 2 |
ACGCAGA | 3010 | 0.0 | 21.080505 | 7 |
CGCAGAG | 3070 | 0.0 | 20.682365 | 8 |
CATGGGG | 3615 | 0.0 | 20.677942 | 4 |
GAGTACA | 3610 | 0.0 | 19.535034 | 1 |
GGGTACG | 145 | 6.588489E-4 | 19.4542 | 1 |
ACAGCGT | 275 | 3.180685E-8 | 18.813292 | 8 |
CTGTCGC | 580 | 0.0 | 17.844976 | 9 |
GTATTAG | 835 | 0.0 | 17.454416 | 1 |
AGTACAT | 3785 | 0.0 | 17.140823 | 2 |