Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033038_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4753815 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6312 | 0.1327775691733902 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5258 | 0.1106059028380364 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 6895 | 0.0 | 47.089348 | 1 |
GTATCAA | 12030 | 0.0 | 42.85381 | 1 |
TCAACGC | 14400 | 0.0 | 35.15031 | 4 |
ATCAACG | 14475 | 0.0 | 34.97002 | 3 |
CAACGCA | 14615 | 0.0 | 34.633217 | 5 |
AACGCAG | 15155 | 0.0 | 33.399174 | 6 |
TATCAAC | 15330 | 0.0 | 33.334335 | 2 |
GTACATG | 16870 | 0.0 | 29.581394 | 1 |
TACATGG | 16990 | 0.0 | 28.441875 | 2 |
ACGCAGA | 17780 | 0.0 | 28.309595 | 7 |
CGCAGAG | 18145 | 0.0 | 27.455215 | 8 |
ACATGGG | 17850 | 0.0 | 26.225267 | 3 |
GCAGAGT | 20700 | 0.0 | 23.657743 | 9 |
CATGGGG | 13495 | 0.0 | 23.403042 | 4 |
GAGTACT | 11010 | 0.0 | 20.660175 | 12-13 |
AGAGTAC | 18035 | 0.0 | 20.260967 | 10-11 |
GAGTACA | 11625 | 0.0 | 20.106037 | 1 |
CAGAGTA | 19680 | 0.0 | 19.403238 | 10-11 |
AGTACTT | 11695 | 0.0 | 19.048206 | 12-13 |
AGTACAT | 11970 | 0.0 | 18.807798 | 2 |