Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033037_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3106064 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5441 | 0.1751734671275286 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4532 | 0.14590813325160074 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4205 | 0.0 | 54.242535 | 1 |
GTATCAA | 7690 | 0.0 | 42.52984 | 1 |
ATCAACG | 9115 | 0.0 | 35.009876 | 3 |
TCAACGC | 9135 | 0.0 | 34.93379 | 4 |
CAACGCA | 9320 | 0.0 | 34.24036 | 5 |
AACGCAG | 9615 | 0.0 | 33.092064 | 6 |
TATCAAC | 9890 | 0.0 | 32.911915 | 2 |
ACGCAGA | 11400 | 0.0 | 27.745188 | 7 |
GTACATG | 10080 | 0.0 | 27.0694 | 1 |
CGCAGAG | 11810 | 0.0 | 26.742613 | 8 |
TACATGG | 10580 | 0.0 | 24.88843 | 2 |
GCAGAGT | 13105 | 0.0 | 23.705488 | 9 |
ACATGGG | 10835 | 0.0 | 23.292864 | 3 |
CAGAGTA | 12400 | 0.0 | 21.035473 | 10-11 |
GTGGTAT | 1775 | 0.0 | 20.97439 | 1 |
CATGGGG | 8100 | 0.0 | 20.888245 | 4 |
AGAGTAC | 11795 | 0.0 | 20.600302 | 10-11 |
CCGATCG | 160 | 5.4179523E-5 | 20.561865 | 9 |
GAGTACT | 8075 | 0.0 | 20.283587 | 12-13 |
GAGTACA | 7350 | 0.0 | 19.683922 | 1 |