SRR1033035_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1033035_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	238281
Sequences flagged as poor quality	0
Sequence length	100
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3174	1.3320407418132374	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3029	1.271188218951574	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1646	0.6907810526227437	No Hit
CTTATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGT	1434	0.6018104674732774	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	756	0.31727246402356885	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	699	0.29335112745036324	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	601	0.252223215447308	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	576	0.24173140116081435	No Hit
ATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTT	535	0.22452482573096472	TruSeq Adapter, Index 1 (95% over 21bp)
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG	332	0.13933129372463604	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG	330	0.13849194858171654	No Hit
ACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTTCT	303	0.12716078915230336	RNA PCR Primer, Index 1 (95% over 23bp)
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT	276	0.1158296297228902	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC	273	0.11457061200851096	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	269	0.11289192172267196	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG	243	0.10198043486471854	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGTCT	45	1.610484E-5	52.21989	7
TCGTCTT	50	3.0029849E-5	46.997902	8
GGTATCA	1835	0.0	46.198437	1
CATAGGT	65	2.7764472E-6	43.382675	4
TTAATCG	55	5.271835E-5	42.725365	4
TGATTCG	50	0.0016996937	37.59832	5
GACCCTC	70	2.1803992E-4	33.56993	7
GTTACGC	35	2.1836626E-4	33.56993	80-81
TACGCAA	35	2.1836626E-4	33.56993	82-83
GTATCAA	2635	0.0	32.35108	2
CGGCCCT	60	0.004155333	31.331932	9
TTCGTTC	60	0.004155333	31.331932	8
ATTCGTT	60	0.004155333	31.331932	7
ATAGACC	75	3.26867E-4	31.331932	4
TAATCGT	75	3.26867E-4	31.331932	5
TACTGGT	80	4.71254E-4	29.435463	2
AGTTACG	40	4.7779802E-4	29.37369	80-81
TCGTTCT	65	0.006145856	28.921783	9
AACCTAC	65	0.006145856	28.921783	7
GATTCGT	65	0.006145856	28.921783	6