Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033034_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3414263 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4986 | 0.1460344443295669 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4062 | 0.11897150278112728 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4425 | 0.0 | 49.843113 | 1 |
GTATCAA | 7845 | 0.0 | 42.231354 | 1 |
TCAACGC | 9085 | 0.0 | 35.694344 | 4 |
ATCAACG | 9220 | 0.0 | 35.27469 | 3 |
CAACGCA | 9340 | 0.0 | 34.72033 | 5 |
AACGCAG | 9690 | 0.0 | 33.563244 | 6 |
TATCAAC | 9865 | 0.0 | 33.048676 | 2 |
ACGCAGA | 11355 | 0.0 | 28.434868 | 7 |
CGCAGAG | 11600 | 0.0 | 27.75368 | 8 |
GTACATG | 8635 | 0.0 | 26.961077 | 1 |
TACATGG | 8770 | 0.0 | 25.302671 | 2 |
GCAGAGT | 13150 | 0.0 | 24.160667 | 9 |
ACATGGG | 8950 | 0.0 | 23.420694 | 3 |
GAGTACT | 9110 | 0.0 | 20.919788 | 12-13 |
GTGGTAT | 2190 | 0.0 | 20.87374 | 1 |
TATACCG | 160 | 5.4184282E-5 | 20.56173 | 5 |
CAGAGTA | 12740 | 0.0 | 20.530052 | 10-11 |
AGAGTAC | 11905 | 0.0 | 20.193453 | 10-11 |
GAGTACA | 6370 | 0.0 | 19.901484 | 1 |
CATGGGG | 6600 | 0.0 | 19.297482 | 4 |