Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033031_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4517039 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6660 | 0.14744172011797993 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5346 | 0.11835186722983794 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 5635 | 0.0 | 51.86977 | 1 |
GTATCAA | 10800 | 0.0 | 47.31753 | 1 |
TCAACGC | 13090 | 0.0 | 38.5263 | 4 |
ATCAACG | 13335 | 0.0 | 37.820145 | 3 |
CAACGCA | 13635 | 0.0 | 36.98474 | 5 |
TATCAAC | 13970 | 0.0 | 36.423256 | 2 |
AACGCAG | 14240 | 0.0 | 35.446415 | 6 |
ACGCAGA | 16170 | 0.0 | 30.89593 | 7 |
CGCAGAG | 16480 | 0.0 | 30.058424 | 8 |
GTACATG | 13695 | 0.0 | 27.504343 | 1 |
TACATGG | 13850 | 0.0 | 26.29548 | 2 |
GCAGAGT | 18800 | 0.0 | 25.923817 | 9 |
ACATGGG | 14440 | 0.0 | 24.607702 | 3 |
AGAGTAC | 16975 | 0.0 | 21.290928 | 10-11 |
CATGGGG | 11090 | 0.0 | 21.147852 | 4 |
GAGTACT | 11730 | 0.0 | 21.054762 | 12-13 |
CAGAGTA | 17950 | 0.0 | 20.802114 | 10-11 |
TACACCG | 585 | 0.0 | 20.084553 | 5 |
TATACGC | 150 | 8.298103E-4 | 18.799143 | 5 |
AGTACTT | 12830 | 0.0 | 18.773397 | 12-13 |