Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033029_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5605662 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7514 | 0.1340430443362443 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6460 | 0.11524062635242724 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 9275 | 0.0 | 44.272285 | 1 |
GTATCAA | 15140 | 0.0 | 39.82652 | 1 |
TCAACGC | 17965 | 0.0 | 32.98842 | 4 |
CAACGCA | 18015 | 0.0 | 32.922947 | 5 |
ATCAACG | 18475 | 0.0 | 32.206696 | 3 |
AACGCAG | 18685 | 0.0 | 31.86817 | 6 |
TATCAAC | 20200 | 0.0 | 29.6502 | 2 |
GTACATG | 21615 | 0.0 | 27.1545 | 1 |
ACGCAGA | 22085 | 0.0 | 26.727962 | 7 |
TACATGG | 21475 | 0.0 | 26.441576 | 2 |
CGCAGAG | 22895 | 0.0 | 25.454145 | 8 |
ACATGGG | 23305 | 0.0 | 23.83775 | 3 |
GCAGAGT | 24200 | 0.0 | 23.751366 | 9 |
CATGGGG | 16935 | 0.0 | 20.563955 | 4 |
GTCTATA | 535 | 0.0 | 20.267572 | 1 |
CAGAGTA | 23695 | 0.0 | 19.775152 | 10-11 |
AGAGTAC | 22180 | 0.0 | 19.73798 | 10-11 |
CATGGGA | 5465 | 0.0 | 18.919348 | 4 |
GAGTACT | 12905 | 0.0 | 18.80996 | 12-13 |
GTACTTT | 12995 | 0.0 | 18.462692 | 14-15 |