Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033028_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3256464 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5770 | 0.17718605211051006 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4796 | 0.14727630951854526 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4635 | 0.0 | 49.51867 | 1 |
GTATCAA | 8720 | 0.0 | 45.453697 | 1 |
TCAACGC | 10120 | 0.0 | 38.684666 | 4 |
ATCAACG | 10170 | 0.0 | 38.49684 | 3 |
CAACGCA | 10255 | 0.0 | 38.12958 | 5 |
AACGCAG | 10600 | 0.0 | 36.977245 | 6 |
TATCAAC | 10980 | 0.0 | 35.954857 | 2 |
ACGCAGA | 12320 | 0.0 | 31.471512 | 7 |
CGCAGAG | 12515 | 0.0 | 30.830935 | 8 |
GCAGAGT | 14045 | 0.0 | 27.03734 | 9 |
GTACATG | 8255 | 0.0 | 26.775986 | 1 |
TACATGG | 8585 | 0.0 | 24.69381 | 2 |
ACATGGG | 8815 | 0.0 | 23.353546 | 3 |
GTGGTAT | 2300 | 0.0 | 22.949852 | 1 |
GAGTACT | 9495 | 0.0 | 22.743725 | 12-13 |
CAGAGTA | 13815 | 0.0 | 21.415056 | 10-11 |
AGAGTAC | 12995 | 0.0 | 21.301657 | 10-11 |
GGTCGAC | 210 | 9.543801E-7 | 20.141768 | 7 |
AGTACTT | 10205 | 0.0 | 20.010035 | 12-13 |
GTACTTT | 10715 | 0.0 | 20.000784 | 14-15 |