Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033026_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3445673 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5010 | 0.14539975209487377 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4159 | 0.12070210957336927 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4720 | 0.0 | 46.815872 | 1 |
GTATCAA | 8110 | 0.0 | 42.583897 | 1 |
ATCAACG | 9555 | 0.0 | 35.712536 | 3 |
TCAACGC | 9605 | 0.0 | 35.42722 | 4 |
CAACGCA | 9790 | 0.0 | 34.66174 | 5 |
TATCAAC | 10070 | 0.0 | 33.909824 | 2 |
AACGCAG | 10060 | 0.0 | 33.8244 | 6 |
ACGCAGA | 11600 | 0.0 | 29.009789 | 7 |
CGCAGAG | 11995 | 0.0 | 28.015305 | 8 |
GTACATG | 9290 | 0.0 | 26.67671 | 1 |
TACATGG | 9470 | 0.0 | 25.514341 | 2 |
GCAGAGT | 13305 | 0.0 | 24.691748 | 9 |
ACATGGG | 9415 | 0.0 | 24.312151 | 3 |
GAGTACT | 9125 | 0.0 | 20.421185 | 12-13 |
AGAGTAC | 12620 | 0.0 | 19.96144 | 10-11 |
CATGGGG | 7170 | 0.0 | 19.861834 | 4 |
GTACGAC | 265 | 2.0971129E-8 | 19.510193 | 3 |
CAGAGTA | 13590 | 0.0 | 19.314795 | 10-11 |
CGTATAC | 245 | 1.9649633E-7 | 19.18442 | 3 |
GTACTTT | 10140 | 0.0 | 18.284359 | 14-15 |