Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033023_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2521639 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4714 | 0.18694190564152918 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3784 | 0.1500611308755932 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3700 | 0.0 | 51.10011 | 1 |
GTATCAA | 6945 | 0.0 | 43.653385 | 1 |
TCAACGC | 8185 | 0.0 | 36.46025 | 4 |
ATCAACG | 8205 | 0.0 | 36.315536 | 3 |
CAACGCA | 8360 | 0.0 | 35.64081 | 5 |
AACGCAG | 8680 | 0.0 | 34.489292 | 6 |
TATCAAC | 8870 | 0.0 | 33.89625 | 2 |
ACGCAGA | 10020 | 0.0 | 29.783148 | 7 |
CGCAGAG | 10235 | 0.0 | 29.019762 | 8 |
GCAGAGT | 11270 | 0.0 | 26.104479 | 9 |
GTACATG | 6425 | 0.0 | 25.684677 | 1 |
TACATGG | 6420 | 0.0 | 24.516928 | 2 |
ACATGGG | 6805 | 0.0 | 22.998417 | 3 |
GAGTACT | 7970 | 0.0 | 22.05352 | 12-13 |
AGAGTAC | 10335 | 0.0 | 21.122234 | 10-11 |
CAGAGTA | 11275 | 0.0 | 20.778452 | 10-11 |
AGTACTT | 8475 | 0.0 | 20.07398 | 12-13 |
GTACTTT | 8730 | 0.0 | 19.83754 | 14-15 |
GTATTAG | 1245 | 0.0 | 19.69306 | 1 |
ACACCGT | 305 | 5.2150426E-9 | 18.490387 | 6 |